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PepTracker®: Encyclopedia of Proteome Dynamics



EPD Publications:

Publication Authors Journal Year Pubmed ID Description
The Encyclopedia of Proteome Dynamics: The KinoViewer Brenes A, & Lamond A.I. Bioinformatics 2018 30239567 The KinoViewer
The Encyclopedia of Proteome Dynamics: a big data ecosystem for (prote)omics Brenes A, Afzal V, Kent R & Lamond A.I. Nucleic Acids Research 2017 28981707 Main EPD manuscript

Publications within the EPD and Proteomics Reviews:

Publication Authors Journal Year Pubmed ID Organism
Proteomic analysis of cell cycle progression in asynchronous cultures, including mitotic subphases, using PRIMMUS. Ly T, Whigham A, Clarke R, Brenes-Murillo AJ, Estates B, Madhessian D, Lundberg E, Wadsworth P & Lamond AI eLife 2017 29052541 Homo sapiens
Multi-omics Analyses of Starvation Responses Reveal a Central Role for Lipoprotein Metabolism in Acute Starvation Survival in C. elegans Harvald EB, Sprenger RR, Dall KB, Ejsing CS, Nielsen R, Mandrup S, Murillo AB, Larance M, Gartner A, Lamond AI, Færgeman NJ. Cell Systems 2017 28734827 Caenorhabditis elegans
Comparative genetic, proteomic and phosphoproteomic analysis of C. elegans embryos with a focus on ham-1/STOX and pig-1/MELK in dopaminergic neuron development Offenburger SL, Bensaddek D, Murillo AB, Lamond AI, Gartner A. Sci Rep 2017 28659600 Caenorhabditis elegans
Phosphoproteomic Analyses of Interleukin 2 Signaling Reveal Integrated JAK Kinase-Dependent and -Independent Networks in CD8+ T Cells Ross SH, Rollings C, Anderson KE, Hawkins P, Stephens R & Cantrell DA Immunity. 2016 27566939 Mus musculus
Deep Proteome Analysis Identifies Age-Related Processes in C. elegans Naranyan V, Ly T, Pourkarimi E, Murillo AB, Gartner A, Lamond AI, Kenyon C Cell Systems. 2016 27453442 Caenorhabditis elegans
Global Membrane Protein Interactome Analysis using In vivo Crosslinking and MS-based Protein Correlation Profiling. Larance M, Kirkwood KJ, Tinti M, Murillo AB, Ferguson M and Lamond AI Mol Cell Proteomics 2016 27114452 Homo sapiens
Micro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level. Bensaddek D, Narayan V, Nicolas A, Brenes Murillo A, Gartner A, Kenyon CJ, Lamond AI. Proteomics 2016 26552604 Caenorhabditis elegans
The cytotoxic T cell proteome and its shaping by the kinase mTOR. Hukelmann JL, Anderson KE, Sinclair LV, Grzes KM, Murillo AB, Hawkins PT, Stephens LR, Lamond AI, Cantrell DA. Nat Immunol 2015 26551880 Mus musculus
Multidimensional proteomics for cell biology. Larance M, Lamond AI. Nat Rev Mol Cell Biol. 2015 25857810 Review
Global proteomics analysis of the response to starvation in C. elegans. Mol Cell Proteomics. Larance M, Pourkarimi E, Wang B, Murillo AB, Kent R, Lamond AI, Gartner A. Mol Cell Proteomics 2015 25963834 Caenorhabditis elegans
Quantitative Phosphoproteomics of Cytotoxic T Cells to Reveal Protein Kinase D 2 Regulated Networks Navarro M, Goebel J, Hukelmann J & Cantrell DA Mol Cell Proteomics 2014 25266776 Mus musculus
A perspective on proteomics in cell biology. Ahmad Y, Lamond AI. Trends Cell Biol. 2014 24284280 Review
A perspective on proteomics in cell biology. Ahmad Y, Lamond AI. Trends Cell Biol. 2014 24284280 Review
A proteomic chronology of gene expression through the cell cycle in human myeloid leukemia cells. Ly T, Ahmad Y, Shlien A, Soroka D, Mills A, Emanuele MJ, Stratton MR, Lamond AI. Elife 2014 24596151 Homo sapiens
Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics. Kirkwood KJ, Ahmad Y, Larance M, Lamond AI. Mol Cell Proteomics 2013 24043423 Homo sapiens
Global subcellular characterization of protein degradation using quantitative proteomics. Larance M, Ahmad Y, Kirkwood KJ, Ly T, Lamond AI. Mol Cell Proteomics 2013 23242552 Homo sapiens
Characterization of MRFAP1 Turnover and Interactions Downstream of the NEDD8 Pathway. Larance M, Kirkwood KJ, Xirodimas DP, Lundberg E, Uhlen M, Lamond AI. Mol Cell Proteomics. 2012 22038470 Homo sapiens
A quantitative spatial proteomics analysis of proteome turnover in human cells. Boisvert FM, Ahmad Y, Gierlinski M, Charrière F, Lamond D, Scott M, Barton G, Lamond AI. Mol Cell Proteomics 2012 21937730 Homo sapiens
Stable-isotope labeling with amino acids in nematodes. Larance M, Bailly AP, Pourkarimi E, Hay RT, Buchanan G, Coulthurst S, Xirodimas DP, Gartner A, Lamond AI. Nat Methods 2011 21874007 Caenorhabditis elegans
A quantitative proteomics analysis of subcellular proteome localization and changes induced by DNA damage. Boisvert FM, Lam YW, Lamont D, Lamond AI. Mol Cell Proteomics 2010 20026476 Homo sapiens