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PepTracker®: Encyclopedia of Proteome Dynamics

PART OF THE PEPTRACKER® PROJECT

Publications

Lamond Laboratory Publications, including papers with data featured in the EPD


Deep Proteome Analysis Identifies Age-Related Processes in C. elegans
Naranyan V, Ly T, Pourkarimi E, Murillo AB, Gartner A, Lamond AI, Kenyon C
Cell Systems. 2016 July 21. doi: 10.1016/j.cels.2016.06.011. [Epub ahead of print] PubMed PMID: 27453442.

Global Membrane Protein Interactome Analysis using In vivo Crosslinking and MS-based Protein Correlation Profiling.
Larance M, Kirkwood KJ, Tinti M, Murillo AB, Ferguson M and Lamond AI
Mol Cell Proteomics. 2016 April 25. doi: 10.1074/mcp.O115.055467. PubMed PMID: 27114452.

The cytotoxic T cell proteome and its shaping by the kinase mTOR.
Hukelmann JL, Anderson KE, Sinclair LV, Grzes KM, Murillo AB, Hawkins PT, Stephens LR, Lamond AI, Cantrell DA.
Nat Immunol. 2015 Nov 9. doi: 10.1038/ni.3314. [Epub ahead of print] PubMed PMID: 26551880.

Micro-proteomics with iterative data analysis: Proteome analysis in C. elegans at the single worm level.
Bensaddek D, Narayan V, Nicolas A, Brenes Murillo A, Gartner A, Kenyon CJ, Lamond AI.
Proteomics. 2016 Feb;16(3):381-92. doi: 10.1002/pmic.201500264. Epub 2016 Jan 7. PubMed PMID: 26552604.

Multidimensional proteomics for cell biology.
Larance M, Lamond AI.
Nat Rev Mol Cell Biol. 2015 May;16(5):269-80. doi: 10.1038/nrm3970. Epub 2015 Apr 10. PubMed PMID: 25857810.

Global proteomics analysis of the response to starvation in C. elegans. Mol Cell Proteomics.
Larance M, Pourkarimi E, Wang B, Murillo AB, Kent R, Lamond AI, Gartner A.
2015 May 11. pii: mcp.M114.044289. [Epub ahead of print] PubMed PMID: 25963834.

Proteomic analysis of the response to cell cycle arrests in human myeloid leukemia cells
Ly, T., Endo A., Lamond A.I.
eLife 2015;4:e04534 DOI:10.7554/eLife.04534

A perspective on proteomics in cell biology.
Ahmad Y, Lamond AI.
Trends Cell Biol. Volume 24, Issue 4, p257–264, April 2014 pii: S0962-8924(13)00191-8. doi: 10.1016/j.tcb.2013.10.010. PMC ID: 3989996

A proteomic chronology of gene expression through the cell cycle in human myeloid leukemia cells.
Ly T, Ahmad Y, Shlien A, Soroka D, Mills A, Emanuele MJ, Stratton MR, Lamond AI.
Elife. 2014 March 4;3:e01630. doi: 10.7554/eLife.01630. PubMed PMID: 24596151; PubMed Central PMCID: PMC3936288.

Characterization of native protein complexes and protein isoform variation using size-fractionation-based quantitative proteomics.
Kirkwood KJ, Ahmad Y, Larance M, Lamond AI.
Mol Cell Proteomics. 2013 Dec;12(12):3851-73. doi:10.1074/mcp.M113.032367. Epub 2013 Sep 16. PubMed PMID: 24043423; PubMed Central PMCID: PMC3861729.

Global subcellular characterization of protein degradation using quantitative proteomics.
Larance M, Ahmad Y, Kirkwood KJ, Ly T, Lamond AI.
Mol Cell Proteomics. 2013 Mar;12(3):638-50. doi: 10.1074/mcp.M112.024547. Epub 2012 Dec 12. PubMed PMID: 23242552; PubMed Central PMCID: PMC3591657.

Characterization of MRFAP1 Turnover and Interactions Downstream of the NEDD8 Pathway. Larance M, Kirkwood KJ, Xirodimas DP, Lundberg E, Uhlen M, Lamond AI.
Mol Cell Proteomics. 2012 Mar;11(3) PubMed PMID: 22038470.

Systematic analysis of protein pools, isoforms and modifications affecting turnover and subcellular localisation.
Ahmad Y, Boisvert FM, Lundberg E, Uhlen M, Lamond AI.
Mol Cell Proteomics. 2012 Mar;11(3) PubMed PMID: 22002106.

A quantitative spatial proteomics analysis of proteome turnover in human cells.
Boisvert FM, Ahmad Y, Gierlinski M, Charrière F, Lamond D, Scott M, Barton G, Lamond AI.
Mol Cell Proteomics. 2012 Mar;11(3) PubMed PMID: 21937730.

Stable-isotope labeling with amino acids in nematodes.
Larance M, Bailly AP, Pourkarimi E, Hay RT, Buchanan G, Coulthurst S, Xirodimas DP, Gartner A, Lamond AI.
Nat Methods. 2011 Aug 28;8(10):849-51. doi: 10.1038/nmeth.1679. PubMed PMID: 21874007; PubMed Central PMCID: PMC3184259.

A quantitative proteomics analysis of subcellular proteome localization and changes induced by DNA damage.
Boisvert FM, Lam YW, Lamont D, Lamond AI.
Mol Cell Proteomics. 2010 Mar;9(3):457-70.